Switch Orders on under Clover → Settings → Sync.
Website orders into Clover
Each online order is created in Clover with its lines, discounts, shipping and fees, the customer's details and your order number in the note. Totals match what the customer paid, including sale prices and add-ons.
Turn on Auto Print Online Orders under Clover → Settings → Checkout and each one prints on your Clover printer as it arrives.
Order types
Show a Dine In / Take Out / Delivery choice at checkout, or set a default, under Clover → Settings → Checkout. The choice is sent to Clover with the order. It works on both the classic checkout and the newer block checkout.
In-store sales on your website
Pulling orders from Clover brings your till sales into WooCommerce so your reports cover both. They never take stock off your website a second time (Clover already counted them) and they do not trigger order emails.
The bulk pull buttons under Clover → Sync are for one-off imports and ask before they run. Everyday syncing happens by itself.